Training requirements for INT service/queue observing

This data is redundant, in the sense that the TO's most likely are not going to act as queue observers after all. However, this information still deserves it's place on the web as we *will* encounter many of these situations during the night, queue observers or not



Access atmospheric conditions
Read proposals and make the selection
Starting up the observing system
Quality control of detector performance
CCD read out speeds, gain, linearity
Taking bias frames
Internal & Sky flats with IDS
Dome & Sky flats with WFC
Taking comparison arcs with IDS
Taking flux standards with IDS
Taking Velocity standards with IDS
Taking photometric standards with WFC
Checking rotation, tilt and focus using ING scripts for IDS
Checking tilt and focus using ING scripts for WFC
Adjusting the cryostat micrometer settings
Checking the central wavelength of IDS by arcline plots
Setting up the CCD window
Changing grating and collimator in IDS
Changing filter of the WFC, updating the ING filter database
Analysing the data using IRAF
Making the data available to the observers via the ftp area
Checking diskspace, deleting files
Writing data to D-tape
Control instrument from the engineering PC
Recover from faults on the obs/data systems, including shutdown
Getting finding charts, positions, magnitudes using the SIMBAD account


Access atmospheric conditions

As experienced TO's, we know the several ways to judge the weather conditions :
Description of safety limits can be found here
How to record weather downtime can be found here

Read proposals and make the selection

The Service Proposals are stored in folders at the control room, one for IDS and one for WFC. Making the decision on which proposals to do should be done according to the following guidelines: Once having settled on a set of proposals and ordered them throughout the night, it is important to get an idea of the calibration needed. Almost all proposals require at least flats (being sky or lamp), and specially the IDS lamp flats for all proposals should be done before starting observations of obvious reasons (waisting 2 hours dark time doing lamps doesn't look good in the papers). This can mean a lot of work: changing gratings, wavelenght regions etc., doing at least 5 flats at each particular setup. This is really the reason why the proposals should be selected with the least amount of instrumental changes; Each setup requires calibration, and the more setups you work with, the greater is the risk also that returning to a particular setup later that night has suffered from small changes due to grating/collimator flexing etc.

Starting up the observing system

The most up-to-date information on how to start up the current observing system is kept elsewhere on the TOweb, click here to view

Quality control of detector performance

This information is public available on the ING web pages

CCD read out speeds, gain, linearity

This information is public available on the ING web pages

Taking bias frames

Introduction: To prevent a low level signal to transform into a negative value after being converted to ADU (by the Analog-to-Digital Converter in the CCD controller), a constant bias offset of typically 500-1000 ADU is introduced to the value of each pixel by means of CCD hardware setup. Ideally, subtracting two bias frames should not yield anything but the random pixel-to-pixel noise, gaussian in distribution with a mean value of zero. The bias frames can however sometimes suffer from:
Application: As one of the very first things to check when getting to the telescope is whether the bias suffers from any of these effects. If structures are present, call the DT. It might be that the problem is wrong cabling. If the bias looks ok, there is really no reason to waste time during the night to take biases unless the observer specifically ask for it. Any changes of the mean bias level during the night is then typically taken into account by the observer by using the CCD overscan region(s) to estimtate the actual bias level (descriped in more detail in the image/spectra reduction courses notes). Examining a bias frame can tell you whether there is an offset present between the mean 'real' bias level and the mean overscan level. This is a subtle effect, an worries the fewest observer. In summary: Take some 3 bias'es in the evening, get the mean. If everything looks ok, take a couple more in the morning and everybody will be happy.

Internal & Sky flats with IDS

Introduction: The light reaching the CCD pixels through a spectrograph is basically affected by three distinct sources of disturbance which can be removed using flatfield images:
1. Dirt/dust particles on the slit and CCD window. Grains on the slit will show up as lines of lower intensity along the spectral direction, whereas unwanted objects on the CCD window/filters will show up as classic dougnut shaped blobs on the frames.
2. Fringe patterns. These are mostly seen in the red, and can unfortunately vary in time.
3. Pixel-to-pixel variations. These variations are basically the result of small structural variations of the individual pixels. Some pixels can turn out to be nearly 'dead', i.e. with almost no light response. Dead columns and other cosmetic effects (caused by bad chip manufaction) will also be mapped by the flatfield image.
The basic idea is to extract these spatial structures from the flatfield image and use this information to remove the same structures on the object frames. As decriped in the Spectral Reduction Notes, you will need to do a proper normalization of the flatfield image before applying it to the object frame(s). Because each arithmetic operation performed between two CCD frames will increase the noise (and therefore decrease the quality), the more flatfields the better! More counts means higher Signal-to-Noise ratio and therefore less noise. Due to CCD/grating efficiency dependency of wavelength, you will typically get much less counts in the blue than in the red part of the spectrum (easily a factor of 10). To accumulate enough signal in the blue, it is therefore necessary to take many flatfields, which in practice means of the order of 10.
Application: If the observers program deals with extended objects (galaxies, clouds,..), he most likely requires sky flats to ensure a flat illumination along the slit (spatial direction). Sky flats should be taken at parallactic angle to minimize the effects of atmospheric refraction. The slitwidth when taking the flats (sky or lamp) should be kept as close to the actual slitwidth used during observations. Internal tungsten flats should be taken before beginning the actual observations in order not to waste dark time. If several programs are planned for the night, tungsten flats should be taken for each setup, which means for each grating/central wavelength required by the observer(s). As at least some 6-10 exposures should be taken for each setup, you can easily end up with 50 flatfields! If you dont want to end up in the morning having to spend hours doing this, it is a very good idea to start out early in the afternoon by carefully reading the proposals to figure out which flatfields you need.

Dome & Sky flats with WFC

Introduction:Pixel-to-pixel variations, dead columns and other cosmetic effects plus vignetting at the edge of the field are all effects that can be corrected by taking appropriate flat fields. As with spectroscopy, all imaging applications will benefit from a good set of flatfields.
Application: If the weather permits, always go for sky flats instead of dome flats. Due to the enormous field of view of WFC (30 arcmin squared), none of the cataloged ING flatfield areas will be free of stars. To get a 'clean' flatfield, the procedure is to step the telescope some few arcseconds between each flatfield exposure. This enables the observer the filter out the stars when doing the datareduction (For example by using the IRAF task 'flat combine', as described in the Image Reduction I notes. The four EEV chips are linear up to some 50k ADU, and observers typically aim for some 20-30k ADU counts in the flatfields. The read-out time for the 4 CCD's is around 160 seconds which means that in order to get the same amount of counts in the next flatfield exposure, you will need to double the exposure time. One way to estimate when to start exposing is to use the autoguider readings. When the autoguider loral-chip no longer saturates in 1 second read-outs, you may consider beginning. On a typical twillight, you have time enough to get some 5 flatfields in one filter before it gets to dark. Remeber that the sky is much brighter in R than in B, so if the observer requests flatfields in both filters, start out with B in the evening and R in the morning.

Taking comparison arcs with IDS

Introduction: Spectra of an arc lamp is used to relate the pixel values along the dispersion direction with wavelengths, as the lines produced by the arc lamp are well-known from the laboratory. As IDS suffers from a certain amount of flexure (due to rotator/telescope motion and temperature variations), the wavelength-to-pixel correlation will change during the night. The flexure is of the order of few tenth of a pixel, translating into a wavelength displacement of some few tenth of an Angstrom.
Application: Depending on the actual program, the observers might request only few (or none) arc calibration spectra, one for each object or even two for each object, one before and one after the object exposure. Which lamp(s) to use depends mainly on the observed wavelength region as the different arc lamps (cupper, neon and argon) produces different amount of lines as a function of the wavelength. In the blue region (3000-5000A), a combination of CuAr is a good choice. In the red, CuNe is best. For very high dispersion, ThAr can be used. Exposure times for arcs are typically some 10-60 seconds. As the sensitivity of the CCD's drops of rapidly in the blue, it is important to check that there are enough counts in the blue arclines. It might be necessary to use a blue filter to prevent the red arclines from saturating.

Taking flux standards with IDS

Introduction: In order to derive accurate effective temperatures, bolometric luminosities, and surface gravities for astronomical objects from their energy distribution, it is neccessary to calibrate spectroscopic observations with sources of known spectral energy distribution. These sources are known as flux standards. The difference between the true (tabulated) energy distribution and the observed energy distribution of a flux standard is mainly due to the finite grating effeciency and CCD quantum effeciency, although all light reducing elements throughout the atmosphere/telescope/instrument is included. Deriving a function which multiplied with the observed spectrum yields the tabulated values (response function?) can then be applied on the target objects to give the true energy distribution.
Application: It is essential that all light from the flux standard enters through the slit. To achive this, a wide slit of typically 7-9" should be used. For good policy, observe when possible at parallactic angle to reduce the effect of atmospheric refraction. If the observing program extends over several hours, the flux std. observations should be taken as far apart as possible to take into account variations of the atmospheric conditions, like dust. No need to say, of course, that flux standard observations in cloudy conditions are pretty useless if the application calls for absolute flux calibraion! A list of suitable flux standards can be found in the blue folder labelled "Spectral Flux Standards", situated in the INT control room. Typical magnitudes of these flux standards are v=11-13, so an exposure time of 100-300s should be expected. Each flux standard should be accompanied by a comparison spectrum (arc lamp).


Taking velocity standards with IDS

Introduction: Velocity standards have a well-known radial velocity, and a descrepency between this velocity and the velocity deduced from an observation is the indication of an instrumental zero-point offset.
Application: A list of suitable velocity standards can be found in the astronomical almanak. These stars are fairly bright, and typical exposures are only some few seconds. It is essential that an arc is taken immediately before or after the observation so that the effect of flexture is supressed.


Taking photometric standards with WFC

Introduction:The observers require photometric standard star observations if the program deal with photometry, that is: absolute flux measurements to estimate magintudes and/or surface brightnesses. Almost all programs will require such observations. Application: In the INT control room there should be a red folder labelled 'Landolt 1992: Photometric standard fields', which is a commonly used list of UBVRI standard stars. Each field (plate) contains a certain number of standard stars, which in the case of WFC sums up to quite a lot of stars due to the big field of view. If the observer do not explicitly tell you the field to observe, pick an appropriate one from the list on basis of ra/dec. Observe, if possible, the same field at different airmasses so the observer can calculate the atmospheric extintion curve.

Checking rotation, tilt and focus using ING scripts for IDS

Rotation - Cambridge link, parts out of date
Tilt - Cambridge link, parts out of date
Focus - Cambridge link, parts out of date

Checking tilt and focus using ING scripts for WFC

There are at the moment no specific scripts available to calculate tilt for the WFC. If you want to check that the ccd's are aligned properly (PA=180 -> North is up), step the telescope across a starfield and measure manually the X & Y positions. Also check the actual kapstain readings agree with what is recorded in the logbook. If the readings are correct, the WFC should always be optimal aligned. Stars should come in focus around 46mm (telescope focus).

Adjusting the cryostat micrometer settings

Cambride link - some parts out of date.

Checking the central wavelength of IDS by arcline plots

Introduction: Although I've never seen IDS fail to center on the demanded center wavelength, it is quite re-assuring to quickly check by using an arcline spectrum. Who would like to suddenly realize that the last 2 hours of observation has been wasted due to wrong wavelength region?
Application: After having acquired an comparison arc, we need to be able to identify some lines in the spectrum. At the moment, we have at least two ways of doing that: Note that the tabulated relative line intensities not necessarily corresponds to what is measured in the observed spectrum. This is due to lamp temperature dependence among other things.
Having identified some arclines in the spectrum , it is straightforward to do a quick pixel-to-wavelength correlation using IRAF (for full documentation, see notes from the spectra reduction course). This allows us to determine the central wavelength exactly and at the same time determine the spectral resolution (or dispersion) in A/pixel:
1. run task identify (in noao/onedspec) directly on the 2D frame. The parameter nsum determines the number of lines/columns to sum in the 2D image.
2. Mark identified lines with 'm' in interactive mode, when 3 has been marked, use 'l' to look up the rest of the features from the coordinate list (use the right coordinate list!)
3. Check fit with the 'h,j,k,l' keys, and if it looks reasonable, use the colon command ':show' to list the fit parameters. Here you find wavelength of the first pixel and the dispersion in Angstroms per pixel.

Setting up the CCD window

Introduction: The WFC do not allow any windowing; All four chips or nothing! Windowing the CCD when using IDS is on the hand very important, as i) it decreases use of diskspace and ii) decreases the read-out time. Windowing the CCD basically decreases the amount pixels in the spatial direction. Depending on the program, this may be a concern or not (dealing with extended objects or point sources). In any case it is completely safe to window out the pixels outside the length of the slit (30 arcseconds), as no light enters there anyway. (For the new EEV12 chip, this means almost 1000 pixels in x)
Application: With no windowing (SYS> window 1 0 0 0 0), take an arc or lamp. Looking at the image, identify the edges of the slit roughly where the light level falls off. If left and right borders were determined to be at x=700, x=1300, then it would make sense windowing the chip as SYS> window 1 1000 0 600 4150 (x centered at 1000, 600 wide and full range in y). Further windowing should only be done if observer agrees.

Changing grating and collimator in IDS

Grating change: Gratings are placed in the metal shelf on the observing floor. Before you can change the grating, type SYS>Change_IDS to unlock the grating door and position the grating for removal. Once you have unclamped the grating, carefully take it out and store it in it's box. When putting in the new grating, make sure you have the direction right (marked on the grating)! Otherwise the reversed blaze angle will result in a huge loss of throughput. After clamping the grating and closing of the grating door, lock it from the SYS> prompt. Remember to identify the new grating in the menu!
Collimator change: As with grating change, type Change_IDS to unlock the collimator door. The collimators (UV, Red, Wide) are stored in the metal shelf. Three mechanical clamps are holding the collimator in place. Once released, take out the collimator carefully and replace with new. The correct orientation of the collimator is given by the clamping positions. Once in place, close the door, make the apropriate changes in the menu and save & exit to lock the door. An adjustment of the collimator focus is most likely needed after a change.

Changing filter of the WFC, updating the ING filter database

The procedure for changing WFC filters are described in the WFC notes found elsewhere on the TO webpage.

Analysing the data using IRAF

See notes from the TO image- and spectra reduction courses.

Making the data available to the observers via the ftp area

In order to deposit data in the service FTP area simply copy the file (or write from IRAF or whatever) to
/obsdata/serviceinta(b)
/obsdata/servicejkt
/obsdata/servicewhta(b)
Write access depends on being a holder of the group anftpint/jkt/wht. To confirm for any acocunt type 'groups'
To see who HAS got write access use niscat group.org_dir | grep ftp
If you mistakenly cd to /obsdata/service/int you will see a reminder that at least until the migration is complete you must use /obsdata/serviceint and not /obsdata/service/int.

Checking diskspace, deleting files

Diskspace on the three obsdata disks (inta,b,c) can always be checked using unix 'df' command. The diskspace on the currently selected disk is also displayed at the bottom of the log window (as 'enough space for xxx runs..'). If diskspace during the night becomes low, you can either i) Delete verified data on that disk (follow link below), or ii) Change the active disk to one of the others. This is done by the command 'SYS>obsdata /obsdata/intc 68', which tells the system to start writing the data to /obsdata/intc/yymmdd, and that each run is 68Mb large (to calculate remaining diskspace only). Dont forget you changed disk during the night when it comes to writing the data to tape!

Writing data to D-tape

1. Insert the DDS3 (125m) tape in the drive /dev/rmt/0n or /dev/rmt/1n. A DDS3 tape (12GB) should be able to store 150 runs in fits format, or about 300 using tar.
2. Open a new xterm on the Data Reduction machine and change directory to where the data are stored.
3. prompt>tar cvf /dev/rmt/0n *.fit - writes all fit files to tape.

Control instrument from the engineering PC

To be processed under 'TO technical training'

Recover from faults on the obs/data systems, including shutdown

Check TO notes on the specific instrument for fault finding/recovering. These change constantly! The shutdown account should only be used if there is no other way to get the machine up running. When used (directly on the console or through a telnet session to the machine), a proper shutdown will be performed. In cases it is necessary to type 'boot' in the startup process to actually reboot the machine.

Getting finding charts, positions, magnitudes using the SIMBAD account

Introduction: It happens unfortunately quite often that the observers come up with wrong coordinates for their objects. Therefore, before beginning to examining the telescope encoders in greater detail to find the reason why the object did not turn up on the tv, it is quite useful to first check that the target coordinates are correct. This is where the SIMBAD database comes in. This WWW based database contains coordinates, identifiers, basic data and bibliography of a HUGE amount of objects, and it is more than likely you will find the data you are interested in. SIMBAD is fast, and every TO should have access to the database with a simple left-click on the mouse!
Application:A link to the main SIMBAD search window is put on the TO webpage. At the moment, no userid/password is required to logon, but in case that changes, a valid userid/password has kindly been provided by Peter (to be found on the TO webpage). Once logged on, simply type in the object name and hit the submit button. The only tricky thing is to get the identification right. For Messier and NGC objects it's straight forward, simply type 'm31', 'ngc6058', etc. For other objects, however, it can be a bit more tricky. Abell objects for example (planetary nebulae) are normally called e.g. A39 by observers. For SIMBAD to get the right object, however, you'll have to type 'PN A66 37' ! You will need to have a bit patience to get this right, and read the on-line helpfiles. If this leads nowhere, you can as well directly type in the coordinates in the query field as '12 30 45 +30 00 00' which will return a list of objects around a specified radius you select. As a new feature , plots of specific fields can as well be produced. Using the Digitized Sky Survey (DSS) is another option for getting target coordinates (actually it uses the SIMAD database). In addition, DSS can produce fits or gif files of specific fields from the survey. This is properly the closest you get to real finding charts. A link to DSS is also available on the TO webpage.